Read on Twitter
SARS-CoV-2 surveillance by @my_helix update
- New dashboard: you can check all lineages now
Random ex: B.1.1.64 in 4 states (note: I don't know anything about this variant).
https://public.tableau.com/profile/helix6052#!/vizhome/SGTFDashboard/LineagesofInterest
- SGTF info up to Feb 15
- Seq info up to Jan 30
with more results
- New dashboard: you can check all lineages now
Random ex: B.1.1.64 in 4 states (note: I don't know anything about this variant).
https://public.tableau.com/profile/helix6052#!/vizhome/SGTFDashboard/LineagesofInterest
- SGTF info up to Feb 15
- Seq info up to Jan 30
with more results
2/
Of the variants of concern, so far we only identified B.1.1.7 (666 times up to Jan 30). No B.1.351 and no P.1
We identified many B.1.429, a variant of interest. It represents about 20% of the sequences we do every day. But sampling is still biased for SGTF
Of the variants of concern, so far we only identified B.1.1.7 (666 times up to Jan 30). No B.1.351 and no P.1
We identified many B.1.429, a variant of interest. It represents about 20% of the sequences we do every day. But sampling is still biased for SGTF
3/
To assess fraction compared to non-SGTF sequenced, you can also get that info from the 2 files on Github with ALL of the data.
Check it out
https://github.com/myhelix/helix-covid19db
- Info on >300,000 positive tests in last 2.5 months
- Info on 2,843 sequences (2/3 are random non-SGTF)
To assess fraction compared to non-SGTF sequenced, you can also get that info from the 2 files on Github with ALL of the data.
Check it out
https://github.com/myhelix/helix-covid19db
- Info on >300,000 positive tests in last 2.5 months
- Info on 2,843 sequences (2/3 are random non-SGTF)
4/
Tip: if you want to quickly download the 2 files on your computer.
- Click on the file on home page ( https://github.com/myhelix/helix-covid19db).
- Then click on "Raw". see picture.
- Then on your Chrome toolbar: File/Save Page as
=> your turn to play.
Tip: if you want to quickly download the 2 files on your computer.
- Click on the file on home page ( https://github.com/myhelix/helix-covid19db).
- Then click on "Raw". see picture.
- Then on your Chrome toolbar: File/Save Page as
=> your turn to play.
5/
It is very rewarding to see many use this information.
Example: @scottleibrand analysis of what might happen in next few months https://twitter.com/scottleibrand/status/1362330346763603969?s=20
It is very rewarding to see many use this information.
Example: @scottleibrand analysis of what might happen in next few months https://twitter.com/scottleibrand/status/1362330346763603969?s=20
6/
@trvrb also referenced @my_helix work in this great thread of what we might expect in next few months. https://twitter.com/trvrb/status/1362438562449293312?s=20
@trvrb also referenced @my_helix work in this great thread of what we might expect in next few months. https://twitter.com/trvrb/status/1362438562449293312?s=20
7/
To finish, the usual snapshot of % of SGTF in Florida
Feb 14, 5-day avg was: 16% of positive tests are SGTF.
And experimental evidence support that >90% of these are B.1.1.7
Overall cases going down, vaccination is up, B117 is up. We keep tracking.
@ScottGottliebMD
To finish, the usual snapshot of % of SGTF in Florida
Feb 14, 5-day avg was: 16% of positive tests are SGTF.
And experimental evidence support that >90% of these are B.1.1.7
Overall cases going down, vaccination is up, B117 is up. We keep tracking.
@ScottGottliebMD
