Read on Twitter
Ok, here goes - @OBF_BOSC #BOSC2020 #BCC2020 talk about #MultiQC updates in twitter / gif format..
#MultiQC is a tool to make bioinformatics QC visual and easy, instead of collating numbers from hundreds of log files manually.
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#MultiQC is a tool to make bioinformatics QC visual and easy, instead of collating numbers from hundreds of log files manually.
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#MultiQC is written in Python and can be installed via @pypi and #bioconda. It generates a report summarising outputs from lots of tools across multiple samples. It also saves this data as CSV / YAML etc.
What started as an internal reporting tool become super popular!
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What started as an internal reporting tool become super popular!
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#MultiQC now supports nearly 100 different bioinformatics tools and has been worked on by even more contributors on @github - https://github.com/ewels/MultiQC
Check out the bump in modules after the @OBF_BOSC 2017 CoFest hackathon!
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Check out the bump in modules after the @OBF_BOSC 2017 CoFest hackathon!
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#MultiQC now works great on @Windows and has optimised images available for @Docker and @SingularityApp, as well as a @galaxyproject wrapper. Basically, you can use it just about everywhere!
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Recent code refactoring allows you to import #MultiQC into Python scripts and generate reports. I hope to improve this in the future to allow fine-grained parsing and plotting, should work really well with analysis in @ProjectJupyter notebooks!
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You can customise almost everything in a MultiQC report, as well as supplying arbitrary input data: https://multiqc.info/docs/#custom-content
This support is getting better, allowing native report feel for whatever inputs your analysis generates.
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This support is getting better, allowing native report feel for whatever inputs your analysis generates.
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The latest release gives a new flag to help you figure out how to speed up run time (if you need to - you probably don't).
Together with the new docs section, this helps you to squeeze every second out of your pipeline run: https://multiqc.info/docs/#optimising-run-time
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Together with the new docs section, this helps you to squeeze every second out of your pipeline run: https://multiqc.info/docs/#optimising-run-time
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#MultiQC is free and open-source software. You can find the code on GitHub and the homepage is https://multiqc.info/
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![#MultiQC is free and open-source software. You can find the code on GitHub and the homepage is https://multiqc.info/ [8/9]](https://pbs.twimg.com/media/EdgIH_bXgAAECQ-.jpg "#MultiQC is free and open-source software. You can find the code on GitHub and the homepage is https://multiqc.info/ [8/9]")
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Thanks for reading! If you like, you can watch this presentation on YouTube:
Feel free to pop any questions onto this twitter thread, or find me on the MultiQC Gitter chat room: https://gitter.im/ewels/MultiQC
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Feel free to pop any questions onto this twitter thread, or find me on the MultiQC Gitter chat room: https://gitter.im/ewels/MultiQC
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